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Installing/updating R 3.6 on Ubuntu 18.04

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1

I've recently acquired a machine with Ubuntu 18.04 on it. I installed R simply with:

sudo apt-get install r-base

And when I call $ R in console, it starts up with:

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"

Copyright (C) 2018 The R Foundation for Statistical Computing

Platform: x86_64-pc-linux-gnu (64-bit)

...

I'd like to get R 3.6 installed, primarily because I need BiocManager and a bunch of latest versions of other R packages obtained through BiocManager. I've followed the steps here, so now my /etc/apt/sources.list/ looks like (just the bottom bit that's relevant):

deb http://security.ubuntu.com/ubuntu bionic-security main restricted

# deb-src http://security.ubuntu.com/ubuntu bionic-security main restricted

deb http://security.ubuntu.com/ubuntu bionic-security universe

# deb-src http://security.ubuntu.com/ubuntu bionic-security universe

deb http://security.ubuntu.com/ubuntu bionic-security multiverse

# deb-src http://security.ubuntu.com/ubuntu bionic-security multiverse

deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/

# deb-src https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/



deb https://cloud.r-project.org/bin/linux/ubuntu trusty-cran35/

# deb-src https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/

And ran sudo apt-get install r-base again.

But when I run $ R from the console again, I still see:

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"

Copyright (C) 2018 The R Foundation for Statistical Computing

Platform: x86_64-pc-linux-gnu (64-bit)

...

Is there something I'm missing? I'm new to setting up R and Linux in general, so I sense that there's a bunch of literature I'm missing about what's available via apt-get, R versioning for Ubuntu, and so on. Any links to useful man pages would also be very helpful.

ubuntu upgrade repository r

share|improve this question

edited 9 mins ago

AndreyIto

asked 3 hours ago

AndreyItoAndreyIto

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AndreyIto is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
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• 
  
  
  

  
  

  
  
  
  
  
  

  
  
  Did you run sudo apt update before trying to install the latest version? What does apt-cache policy r-base show?
  
  – ajgringo619
  2 hours ago
  

  
  
  
  


• 
  
  
  

  
  

  
  
  
  
  
  

  
  
  Also, you need to remove the deb https://cloud.r-project.org/bin/linux/ubuntu trusty-cran35/ line; you've already added the correct (bionic) line.
  
  – ajgringo619
  1 hour ago
  

  
  
  
  

add a comment | 

1

I've recently acquired a machine with Ubuntu 18.04 on it. I installed R simply with:

sudo apt-get install r-base

And when I call $ R in console, it starts up with:

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"

Copyright (C) 2018 The R Foundation for Statistical Computing

Platform: x86_64-pc-linux-gnu (64-bit)

...

I'd like to get R 3.6 installed, primarily because I need BiocManager and a bunch of latest versions of other R packages obtained through BiocManager. I've followed the steps here, so now my /etc/apt/sources.list/ looks like (just the bottom bit that's relevant):

deb http://security.ubuntu.com/ubuntu bionic-security main restricted

# deb-src http://security.ubuntu.com/ubuntu bionic-security main restricted

deb http://security.ubuntu.com/ubuntu bionic-security universe

# deb-src http://security.ubuntu.com/ubuntu bionic-security universe

deb http://security.ubuntu.com/ubuntu bionic-security multiverse

# deb-src http://security.ubuntu.com/ubuntu bionic-security multiverse

deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/

# deb-src https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/



deb https://cloud.r-project.org/bin/linux/ubuntu trusty-cran35/

# deb-src https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/

And ran sudo apt-get install r-base again.

But when I run $ R from the console again, I still see:

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"

Copyright (C) 2018 The R Foundation for Statistical Computing

Platform: x86_64-pc-linux-gnu (64-bit)

...

Is there something I'm missing? I'm new to setting up R and Linux in general, so I sense that there's a bunch of literature I'm missing about what's available via apt-get, R versioning for Ubuntu, and so on. Any links to useful man pages would also be very helpful.

ubuntu upgrade repository r

share|improve this question

edited 9 mins ago

AndreyIto

asked 3 hours ago

AndreyItoAndreyIto

10622 bronze badges

New contributor

AndreyIto is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.

• 
  
  
  

  
  

  
  
  
  
  
  

  
  
  Did you run sudo apt update before trying to install the latest version? What does apt-cache policy r-base show?
  
  – ajgringo619
  2 hours ago
  

  
  
  
  


• 
  
  
  

  
  

  
  
  
  
  
  

  
  
  Also, you need to remove the deb https://cloud.r-project.org/bin/linux/ubuntu trusty-cran35/ line; you've already added the correct (bionic) line.
  
  – ajgringo619
  1 hour ago
  

  
  
  
  

add a comment | 

I've recently acquired a machine with Ubuntu 18.04 on it. I installed R simply with:

sudo apt-get install r-base

And when I call $ R in console, it starts up with:

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"

Copyright (C) 2018 The R Foundation for Statistical Computing

Platform: x86_64-pc-linux-gnu (64-bit)

...

I'd like to get R 3.6 installed, primarily because I need BiocManager and a bunch of latest versions of other R packages obtained through BiocManager. I've followed the steps here, so now my /etc/apt/sources.list/ looks like (just the bottom bit that's relevant):

deb http://security.ubuntu.com/ubuntu bionic-security main restricted

# deb-src http://security.ubuntu.com/ubuntu bionic-security main restricted

deb http://security.ubuntu.com/ubuntu bionic-security universe

# deb-src http://security.ubuntu.com/ubuntu bionic-security universe

deb http://security.ubuntu.com/ubuntu bionic-security multiverse

# deb-src http://security.ubuntu.com/ubuntu bionic-security multiverse

deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/

# deb-src https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/



deb https://cloud.r-project.org/bin/linux/ubuntu trusty-cran35/

# deb-src https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/

And ran sudo apt-get install r-base again.

But when I run $ R from the console again, I still see:

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"

Copyright (C) 2018 The R Foundation for Statistical Computing

Platform: x86_64-pc-linux-gnu (64-bit)

...

Is there something I'm missing? I'm new to setting up R and Linux in general, so I sense that there's a bunch of literature I'm missing about what's available via apt-get, R versioning for Ubuntu, and so on. Any links to useful man pages would also be very helpful.

ubuntu upgrade repository r

share|improve this question

edited 9 mins ago

AndreyIto

asked 3 hours ago

AndreyItoAndreyIto

10622 bronze badges

New contributor

AndreyIto is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
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sudo apt-get install r-base

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"

Copyright (C) 2018 The R Foundation for Statistical Computing

Platform: x86_64-pc-linux-gnu (64-bit)

...

deb http://security.ubuntu.com/ubuntu bionic-security main restricted

# deb-src http://security.ubuntu.com/ubuntu bionic-security main restricted

deb http://security.ubuntu.com/ubuntu bionic-security universe

# deb-src http://security.ubuntu.com/ubuntu bionic-security universe

deb http://security.ubuntu.com/ubuntu bionic-security multiverse

# deb-src http://security.ubuntu.com/ubuntu bionic-security multiverse

deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/

# deb-src https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/



deb https://cloud.r-project.org/bin/linux/ubuntu trusty-cran35/

# deb-src https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/

R version 3.4.4 (2018-03-15) -- "Someone to Lean On"

Copyright (C) 2018 The R Foundation for Statistical Computing

Platform: x86_64-pc-linux-gnu (64-bit)

...

share|improve this question

edited 9 mins ago

AndreyIto

asked 3 hours ago

AndreyItoAndreyIto

10622 bronze badges

New contributor

AndreyIto is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.

share|improve this question

edited 9 mins ago

AndreyIto

asked 3 hours ago

AndreyItoAndreyIto

10622 bronze badges

New contributor

AndreyIto is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.

asked 3 hours ago

AndreyItoAndreyIto

10622 bronze badges

New contributor

AndreyIto is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.

asked 3 hours ago

AndreyItoAndreyIto

10622 bronze badges