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I have created a few pieces of code - in python and C – that have to be run multiple times, each run with a new set of input values. To do so, I have created a Unix shell script which should run the various programs for the number of different inputs:
#!/bin/sh
_file="${1:-/dev/null}"
while IFS=' ' read -r f1 f2 f3 f4
do
cd folder1
cd folder2
echo "$f1 $f2 $f3 $f4 " > inputs.txt
mpiexec -n 4 a_C_code
cd ..
cd ..
python3 python_code_1.py
python python_code_2.py
python python_code_3.py
python python_code_4.py
echo "$f1" #So I know how many times the loops has been performed
done < "$_file"
The file that is being read into the script has the following form:
1 2 3 4
5 6 7 8
...
However, when I execute the program, it only loops through the first set of inputs (in this example, 1 2 3 4) and finishes without running the programs for the various other sets of inputs.
shell-script shell
edited 15 hours ago
Rui F Ribeiro
42k1483142
asked 20 hours ago
JasKa071JasKa071
82
New contributor
JasKa071 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
add a comment |
I have created a few pieces of code - in python and C – that have to be run multiple times, each run with a new set of input values. To do so, I have created a Unix shell script which should run the various programs for the number of different inputs:
#!/bin/sh
_file="${1:-/dev/null}"
while IFS=' ' read -r f1 f2 f3 f4
do
cd folder1
cd folder2
echo "$f1 $f2 $f3 $f4 " > inputs.txt
mpiexec -n 4 a_C_code
cd ..
cd ..
python3 python_code_1.py
python python_code_2.py
python python_code_3.py
python python_code_4.py
echo "$f1" #So I know how many times the loops has been performed
done < "$_file"
The file that is being read into the script has the following form:
1 2 3 4
5 6 7 8
...
However, when I execute the program, it only loops through the first set of inputs (in this example, 1 2 3 4) and finishes without running the programs for the various other sets of inputs.
shell-script shell
edited 15 hours ago
Rui F Ribeiro
42k1483142
asked 20 hours ago
JasKa071JasKa071
82
New contributor
JasKa071 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
1
Perhaps one of the commands inside the loop is consuming standard input? see for examle processing command output line by line, without mixing standard input
– steeldriver
20 hours ago
add a comment |
I have created a few pieces of code - in python and C – that have to be run multiple times, each run with a new set of input values. To do so, I have created a Unix shell script which should run the various programs for the number of different inputs:
#!/bin/sh
_file="${1:-/dev/null}"
while IFS=' ' read -r f1 f2 f3 f4
do
cd folder1
cd folder2
echo "$f1 $f2 $f3 $f4 " > inputs.txt
mpiexec -n 4 a_C_code
cd ..
cd ..
python3 python_code_1.py
python python_code_2.py
python python_code_3.py
python python_code_4.py
echo "$f1" #So I know how many times the loops has been performed
done < "$_file"
The file that is being read into the script has the following form:
1 2 3 4
5 6 7 8
...
However, when I execute the program, it only loops through the first set of inputs (in this example, 1 2 3 4) and finishes without running the programs for the various other sets of inputs.
shell-script shell
edited 15 hours ago
Rui F Ribeiro
42k1483142
asked 20 hours ago
JasKa071JasKa071
82
New contributor
JasKa071 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
I have created a few pieces of code - in python and C – that have to be run multiple times, each run with a new set of input values. To do so, I have created a Unix shell script which should run the various programs for the number of different inputs:
#!/bin/sh
_file="${1:-/dev/null}"
while IFS=' ' read -r f1 f2 f3 f4
do
cd folder1
cd folder2
echo "$f1 $f2 $f3 $f4 " > inputs.txt
mpiexec -n 4 a_C_code
cd ..
cd ..
python3 python_code_1.py
python python_code_2.py
python python_code_3.py
python python_code_4.py
echo "$f1" #So I know how many times the loops has been performed
done < "$_file"
The file that is being read into the script has the following form:
1 2 3 4
5 6 7 8
...
However, when I execute the program, it only loops through the first set of inputs (in this example, 1 2 3 4) and finishes without running the programs for the various other sets of inputs.
shell-script shell
shell-script shell
edited 15 hours ago
Rui F Ribeiro
42k1483142
asked 20 hours ago
JasKa071JasKa071
82
New contributor
JasKa071 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
edited 15 hours ago
Rui F Ribeiro
42k1483142
asked 20 hours ago
JasKa071JasKa071
82
New contributor
JasKa071 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
edited 15 hours ago
Rui F Ribeiro
42k1483142
edited 15 hours ago
Rui F Ribeiro
42k1483142
edited 15 hours ago
Rui F Ribeiro
42k1483142
42k1483142
asked 20 hours ago
JasKa071JasKa071
82
New contributor
JasKa071 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
asked 20 hours ago
JasKa071JasKa071
82
asked 20 hours ago
JasKa071JasKa071
82
82
New contributor
JasKa071 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
New contributor
JasKa071 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
JasKa071 is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
1
Perhaps one of the commands inside the loop is consuming standard input? see for examle processing command output line by line, without mixing standard input
– steeldriver
20 hours ago
add a comment |
1
Perhaps one of the commands inside the loop is consuming standard input? see for examle processing command output line by line, without mixing standard input
– steeldriver
20 hours ago
1
1
Perhaps one of the commands inside the loop is consuming standard input? see for examle processing command output line by line, without mixing standard input
– steeldriver
20 hours ago
Perhaps one of the commands inside the loop is consuming standard input? see for examle processing command output line by line, without mixing standard input
– steeldriver
20 hours ago
add a comment |
1 Answer
1
active
oldest
votes
The shell code looks OK, and a simplified text version works as expected:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
done
Output:
1 2 3 4
5 6 7 8
9 10 11 12
Therefore steeldriver's comment is probably correct, and either the mpiexec or one of the python programs are consuming the remaining lines of input so that echo never gets to the second line of input.
As an example, consider the above code with one more hungry set of commands added:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
(read x; read x; read x;)
done
Output (note the missing lines):
1 2 3 4
answered 19 hours ago
agcagc
4,79211138
Thank you so much for your answer. It turns out that mpiexec is consuming the remainder of the inputs.
– JasKa071
19 hours ago
add a comment |
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1 Answer
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votes
The shell code looks OK, and a simplified text version works as expected:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
done
Output:
1 2 3 4
5 6 7 8
9 10 11 12
Therefore steeldriver's comment is probably correct, and either the mpiexec or one of the python programs are consuming the remaining lines of input so that echo never gets to the second line of input.
As an example, consider the above code with one more hungry set of commands added:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
(read x; read x; read x;)
done
Output (note the missing lines):
1 2 3 4
answered 19 hours ago
agcagc
4,79211138
Thank you so much for your answer. It turns out that mpiexec is consuming the remainder of the inputs.
– JasKa071
19 hours ago
add a comment |
The shell code looks OK, and a simplified text version works as expected:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
done
Output:
1 2 3 4
5 6 7 8
9 10 11 12
Therefore steeldriver's comment is probably correct, and either the mpiexec or one of the python programs are consuming the remaining lines of input so that echo never gets to the second line of input.
As an example, consider the above code with one more hungry set of commands added:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
(read x; read x; read x;)
done
Output (note the missing lines):
1 2 3 4
answered 19 hours ago
agcagc
4,79211138
Thank you so much for your answer. It turns out that mpiexec is consuming the remainder of the inputs.
– JasKa071
19 hours ago
add a comment |
The shell code looks OK, and a simplified text version works as expected:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
done
Output:
1 2 3 4
5 6 7 8
9 10 11 12
Therefore steeldriver's comment is probably correct, and either the mpiexec or one of the python programs are consuming the remaining lines of input so that echo never gets to the second line of input.
As an example, consider the above code with one more hungry set of commands added:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
(read x; read x; read x;)
done
Output (note the missing lines):
1 2 3 4
answered 19 hours ago
agcagc
4,79211138
The shell code looks OK, and a simplified text version works as expected:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
done
Output:
1 2 3 4
5 6 7 8
9 10 11 12
Therefore steeldriver's comment is probably correct, and either the mpiexec or one of the python programs are consuming the remaining lines of input so that echo never gets to the second line of input.
As an example, consider the above code with one more hungry set of commands added:
seq 12 | paste - - - - |
while IFS=' ' read -r f1 f2 f3 f4 ; do
echo "$f1 $f2 $f3 $f4 "
(read x; read x; read x;)
done
Output (note the missing lines):
1 2 3 4
answered 19 hours ago
agcagc
4,79211138
edited 18 hours ago
answered 19 hours ago
agcagc
4,79211138
answered 19 hours ago
agcagc
4,79211138
answered 19 hours ago
agcagc
4,79211138
4,79211138
Thank you so much for your answer. It turns out that mpiexec is consuming the remainder of the inputs.
– JasKa071
19 hours ago
add a comment |
Thank you so much for your answer. It turns out that mpiexec is consuming the remainder of the inputs.
– JasKa071
19 hours ago
Thank you so much for your answer. It turns out that mpiexec is consuming the remainder of the inputs.
– JasKa071
19 hours ago
Thank you so much for your answer. It turns out that mpiexec is consuming the remainder of the inputs.
– JasKa071
19 hours ago
add a comment |
JasKa071 is a new contributor. Be nice, and check out our Code of Conduct.
JasKa071 is a new contributor. Be nice, and check out our Code of Conduct.
JasKa071 is a new contributor. Be nice, and check out our Code of Conduct.
JasKa071 is a new contributor. Be nice, and check out our Code of Conduct.
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1
Perhaps one of the commands inside the loop is consuming standard input? see for examle processing command output line by line, without mixing standard input
– steeldriver
20 hours ago